PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293283.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

YABBY

Protein Properties

Length: 173aa MW: 19173.9 Da PI: 8.9602

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	151.9	5.7e-47	9	157	1	163
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +d++ +se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ + l+ + ++++ +e++++ s k +s+s s XP_021293283.1 9 MDLVPQSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTR---------PPLQGQCLDPQTSLSLQEKQSFCSDFRKVQSPSPS 94 578899***********************************98553333.........33444444444444444555555555444444443 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 s++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + XP_021293283.1 95 S-----STSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 157 3.....345677899999**********************************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MNLEEKVGMD LVPQSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP 60 PLQGQCLDPQ TSLSLQEKQS FCSDFRKVQS PSPSSSTSSE PSSPKAPFVV KPPEKKHRLP 120 SAYNRFMKEE IQRIKAANPE IPHREAFSAA AKNWARYIPN SPAAPVSGSR NNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	6e-72	YABBY family protein