PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293284.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

YABBY

Protein Properties

Length: 170aa MW: 18788.5 Da PI: 8.9631

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293284.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	145.8	4.5e-45	9	154	1	163
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +d++ +se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ + q + l ++ l++ +++++ + XP_021293284.1 9 MDLVPQSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQ--------CLDPQTSLSLQSFCSDFRKVQ--------- 86 578899***********************************97553332222222........222333333333333333332......... PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +s + s++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + XP_021293284.1 87 SPSPSSSTSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 154 222223445567899999**********************************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MNLEEKVGMD LVPQSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP 60 PLQGQCLDPQ TSLSLQSFCS DFRKVQSPSP SSSTSSEPSS PKAPFVVKPP EKKHRLPSAY 120 NRFMKEEIQR IKAANPEIPH REAFSAAAKN WARYIPNSPA APVSGSRNNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	1e-71	YABBY family protein