PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293293.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ZF-HD
Protein Properties Length: 250aa    MW: 28993.9 Da    PI: 9.8708
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer73.14.1e-2378126356
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                     + +Y++C++NhA  lGg+a+DGC Ef+ps++        +C ACgCHRn+HR+ 
  XP_021293293.1  78 RETYRDCQRNHACYLGGYAIDGCSEFIPSNTM-----ESHCKACGCHRNYHRKV 126
                     679*************************9444.....479************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MENELERYRP VQCFNACQLV NLLALNVPLC KHTERDPLIC NLLNMIYIVN LPFLHTLVSA  60
LHLRERERER ERESEMERET YRDCQRNHAC YLGGYAIDGC SEFIPSNTME SHCKACGCHR  120
NYHRKVPFIY LNESPEIGHG SGKSFWSLRE AKRIARQHRV LPAPSPQVPL QKQQNSNRKF  180
KQRKSKFTXG QREAMRAFAE SLGWTMRNKG RQPEINRFCE RIGVSRLHFK PYFKGTASTS  240
GANSSSSKAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184NRKFKQRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.14e-33ZF-HD family protein