PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293335.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 250aa    MW: 27817.7 Da    PI: 6.8909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002781103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F ++  L  H++ H
  XP_021293335.1  81 FECQYCFKEFANSQALGGHQNAH 103
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MEMDASSPIS QTCDGETGYS PAASCVEKKL RLFGFELNPS KNNDNSLKSS GEGDESVNSS  60
SARETPTKEK SSTGETDDKK FECQYCFKEF ANSQALGGHQ NAHKKERMKK KRLQLQAKRA  120
SINCYLQPFQ NSLGFSYQGS TPWYYESSCY SAPEFTLYEE SQISFNQYEQ DAHPNGSQPP  180
KWYPLPSQMI PFQQDSSMFT LTHADRSREN RPVGLKPSSL PSSKQSCKSL DLQLGLSLQS  240
TIQSSSGSGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-21C2H2 family protein