PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293346.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family YABBY
Protein Properties Length: 218aa    MW: 24256.5 Da    PI: 6.7034
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY219.87.9e-6861692166
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                     ++f+ +eq+CyvqC+fC+til+vsvP +sl +vvtvrCGhC+sllsvn++kas    ql      l+++  +e +e    ee +   ++ +++  
  XP_021293346.1   6 HLFDLPEQICYVQCGFCTTILLVSVPCSSLAMVVTVRCGHCSSLLSVNMMKASfvplQL---LASLGHDHDDEPKEGAVCEEVAAPRKTAAHR-- 95 
                     7899*********************************************9998433333...3344444444444444333333333333333.. PP

           YABBY  93 stsvssekl...senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                         +s +l   s+ne+e++ rv p v++PPekrqr+Psaynrfikeei+r+ka+nP+i h+eafs+aaknWahfP++
  XP_021293346.1  96 ----RSPSLvtsSDNEEEDIVRVNPtVNKPPEKRQRAPSAYNRFIKEEIRRLKAQNPNIPHKEAFSTAAKNWAHFPPM 169
                     ....22223333899999****9888**************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MSTLNHLFDL PEQICYVQCG FCTTILLVSV PCSSLAMVVT VRCGHCSSLL SVNMMKASFV  60
PLQLLASLGH DHDDEPKEGA VCEEVAAPRK TAAHRRSPSL VTSSDNEEED IVRVNPTVNK  120
PPEKRQRAPS AYNRFIKEEI RRLKAQNPNI PHKEAFSTAA KNWAHFPPMD TKGDGESCGL  180
DEGEALWNSD ATQVHIQGND FRERKAARNS IWVKTPFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-84YABBY family protein