PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293442.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 260aa MW: 29659.6 Da PI: 4.2465

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.3e-19	26	80	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe ++++ e++ ++Ak+lgL+ rqV +WFqNrRa+ k+ XP_021293442.1 26 KKRRLTATQVQFLESSFEVENKLEPERKVQIAKELGLQPRQVAIWFQNRRARFKN 80 56689***********************************************995 PP
2	HD-ZIP_I/II	127.6	5.2e-41	26	115	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++ qv++LE+sFe e+kLeperKv++a+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+lk++ ++L ke+e+L++e+ XP_021293442.1 26 KKRRLTATQVQFLESSFEVENKLEPERKVQIAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDSLKASYDELKTDYDNLLKEKEDLENEV 115 9*************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MLSFQPLDKE ESGDDDFDGS YHPPGKKRRL TATQVQFLES SFEVENKLEP ERKVQIAKEL 60 GLQPRQVAIW FQNRRARFKN KQLEKDYDSL KASYDELKTD YDNLLKEKED LENEVLALKE 120 KLLIREEGME TLESLDAINS SNAESKKPNC DTSPENVSHV PLVACKQEEA CSAKSDVFDS 180 DSPRYTDGNH SSLIEPADSS NVFEPDQSDF SQDEEDNLSK SLLHPPFFPK FEVDCYYDAP 240 ASSCNFALPG EDQSFWSSLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	82	RRARFKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-38	HD-ZIP family protein