PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293715.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YB
Protein Properties Length: 230aa    MW: 25495.6 Da    PI: 6.677
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.55.4e-5565161197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl+vyl++yreleg
  XP_021293715.1  65 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRELEG 159
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     e+
  XP_021293715.1 160 ER 161
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MERGGFHGYR KLPNNTTSDV STAFIVVVYF IGYGSGLKVP EMNMRTADVN HTNNYSNSDD  60
NECTVREQDR FMPIANVIRI MRKILPPHAK ISDDAKETIQ ECVSEYISFI TGEANERCQR  120
EQRKTITAED VLWAMSKLGF DDYIEPLTVY LHRYRELEGE RGSIRGEPLG KRAVDYGALS  180
VAAFAPAFHM GHHHGFFGGG GAMGGYLKDA SNAGSSQAAV ANGEPFGHHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.11e-82NF-YB family protein