PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293767.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 298aa MW: 33977.1 Da PI: 7.3416

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l+d++k +G g+W+ +++ g++R++k+c++rw++yl XP_021293767.1 14 RGAWTAMEDRILKDYIKIHGEGQWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.7	9.5e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_021293767.1 67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MGRSPCCSKE GLNRGAWTAM EDRILKDYIK IHGEGQWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKLQDKQ 120 SHSLSNRRPS NRSQKKANPT IETPVRQPSK ANLTSCVIRT KATRCTKVFI NIPEPQLEDT 180 YKPSVLRPFP LPGEPESSEF VAKEDNDPSN FMIDLEVDEN FLSEFLNSEF SQPQPSHFQN 240 KGDSYSNSDA CDPGQNSSTN SDQSLFLSND MMQDADFTSI ASLMESELDW LQDQADPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-66	MYB family protein