PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293904.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 74aa    MW: 8458.28 Da    PI: 4.2815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-112568146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +++++ +E+ l+++  ++ G + W++Ia +++ gRt++++  +w++
   XP_021293904.1 25 KLKFSDDEETLIIRMYNLVGER-WALIAGRIP-GRTAEEIEAYWNT 68
                     689*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    
MADSEHSSSD ATFVDSREET SKEPKLKFSD DEETLIIRMY NLVGERWALI AGRIPGRTAE  60
EIEAYWNTRC STSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.11e-17MYB_related family protein