PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294037.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 199aa MW: 23104.1 Da PI: 8.4786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.8e-18	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G ++Wk Ia + g++R++k+c++rw +yl XP_021294037.1 23 KGAWTAEEDRKLAEVIAVHGAKRWKIIAIKAGLNRCGKSCRLRWMNYL 70 79********************************************97 PP
2	Myb_DNA-binding	50.8	3.9e-16	76	121	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_021294037.1 76 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 121 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MAPLKDETIK MEENVSPKRE VNKGAWTAEE DRKLAEVIAV HGAKRWKIIA IKAGLNRCGK 60 SCRLRWMNYL RPNIKRGNIS DQEEDLILRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNSH 120 LSKKINQKEK QSGATTREGC KAQKRVVENA KEVREENTSR EGEDSNISFD VDEFFDFSNE 180 DPLNLEWMSR FLEVDEGFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40330.1	1e-55	MYB family protein