PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294386.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LSD

Protein Properties

Length: 133aa MW: 14457.4 Da PI: 7.0479

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37	5.4e-12	45	69	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA+ +C++C tV XP_021294386.1 45 CGSCRQLLSYPRGARQAKCSCCETV 69 ************************9 PP
2	zf-LSD1	42.7	9.5e-14	83	107	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+YP+GA+sVRC++C+ V XP_021294386.1 83 CGSCALLLMYPFGASSVRCSSCHLV 107 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence
MANKEGGEQH QQQQVEEEEE GPPPGWQSIP PPQPPPSSEM AQMVCGSCRQ LLSYPRGARQ 60 AKCSCCETVN FVLEAHQVGL VKCGSCALLL MYPFGASSVR CSSCHLVTEI GAHNRRPPWS 120 VQQGHPTPPK AVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-40	LSD family protein