PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294518.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 406aa MW: 46471 Da PI: 7.9828

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.9e-31	87	140	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ XP_021294518.1 87 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 140 8****************************************************7 PP
2	Myb_DNA-binding	47.8	3.3e-15	88	139	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++ +v+av++lGg t+k++ + m+ g++ ++ks++q+y+ XP_021294518.1 88 RLRWTPDLHLSFVHAVERLGGQeraTPKLVLQLMNvRGLSIAHVKSHLQMYR 139 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MIEGIENHDE EKRVESEDQA ENLSAVSSQK CSSFDLNEEA SSEEDYDIDI AKEDEVSVEE 60 DEKRTEGSSS NNNERRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQE RATPKLVLQL 120 MNVRGLSIAH VKSHLQMYRS KKLDEAGQVL RQANRQIQGR DEFRSMLHQV SSSPHQHFRM 180 ENGGIVLARG SLENNITRSL YKPPFHQRPL DFKASISRHQ PNSFVSKARG QENGFPKPTA 240 LYNQGQSNQI HTMDTAMRVG PLRPGRFLEE KRWHPFEMIS NLWKVNGNMT KDTFATTCSQ 300 SQSPYFCTRP SSDGGSYSTR PAEGNLGNKK MIGQFVSNKH DSLSKFSSCR PEFEAPLWLE 360 LKQDKLLKDR EWLPDLQLRL SQRIGIDDEK THCKGTQEIS TQLSLS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MIEGIENHDE EKRVESEDQA ENLSAVSSQK CSSFDLNEEA SSEEDYDIDI AKEDEVSVEE  60
DEKRTEGSSS NNNERRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQE RATPKLVLQL  120
MNVRGLSIAH VKSHLQMYRS KKLDEAGQVL RQANRQIQGR DEFRSMLHQV SSSPHQHFRM  180
ENGGIVLARG SLENNITRSL YKPPFHQRPL DFKASISRHQ PNSFVSKARG QENGFPKPTA  240
LYNQGQSNQI HTMDTAMRVG PLRPGRFLEE KRWHPFEMIS NLWKVNGNMT KDTFATTCSQ  300
SQSPYFCTRP SSDGGSYSTR PAEGNLGNKK MIGQFVSNKH DSLSKFSSCR PEFEAPLWLE  360
LKQDKLLKDR EWLPDLQLRL SQRIGIDDEK THCKGTQEIS TQLSLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-37	G2-like family protein