PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294621.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 357aa MW: 39589.6 Da PI: 6.6488

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl XP_021294621.1 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.4	2.1e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ XP_021294621.1 67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHD 120 VPALASFADV HNSTPPEDSF ISLNANPNLI LSTHQDQVYL SPAAPVLQSF GHGDLKPNSN 180 NYHIDLVHHN FPTPMLPPPS NTSSSFDPTW PLPPFVPQHL DHQNQEDVQI FSNELVQNFV 240 SDKLINPTTA VTPYDHPLMA PTVPKLCEIL EGNICSLQQA SVSLENIDPV SRLSSSCFPS 300 AGSTYPHDMH VPTSQMEYMD TIITLQLPSS SSSSSLSALS SGQYVTNPNL PSSSWDP

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHD  120
VPALASFADV HNSTPPEDSF ISLNANPNLI LSTHQDQVYL SPAAPVLQSF GHGDLKPNSN  180
NYHIDLVHHN FPTPMLPPPS NTSSSFDPTW PLPPFVPQHL DHQNQEDVQI FSNELVQNFV  240
SDKLINPTTA VTPYDHPLMA PTVPKLCEIL EGNICSLQQA SVSLENIDPV SRLSSSCFPS  300
AGSTYPHDMH VPTSQMEYMD TIITLQLPSS SSSSSLSALS SGQYVTNPNL PSSSWDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	9e-83	MYB family protein