PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294820.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27631.4 Da    PI: 9.9637
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_021294820.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                    79***********************************************8 PP
2K-box115.16.8e-38921884100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+a+ +qqe+akL+ +i nLq+++Rh+lGe+L+ L +k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k+
  XP_021294820.1  92 SNTGSVSEANAQFYQQEAAKLRVQIGNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKI 186
                     444459****************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_021294820.1 187 AE 188
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MVYPNESGET SPQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKAT IERYKKTCAD SSNTGSVSEA NAQFYQQEAA KLRVQIGNLQ  120
NSNRHMLGES LSALPMKDLR SLENRLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAENE RKQQNINLMP GGSNFEIMPS QPFDSRNYFQ VNALQPASHY PHQDQMALQL  240
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-130MIKC_MADS family protein