PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294850.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 244aa MW: 28105.2 Da PI: 6.8869

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.4	3.7e-41	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l + e+++am+++v++++ara+dPv G++++i++lq+q+e ++ael+ XP_021294850.1 14 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLTPPEKDIAMRTIVFQSDARANDPVGGCYRIIQELQRQIEYSQAELD 108 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ XP_021294850.1 109 LVFHQ 113 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MSIPRTGSNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFLNAHKLF GVSNITKIIK 60 NLTPPEKDIA MRTIVFQSDA RANDPVGGCY RIIQELQRQI EYSQAELDLV FHQLAICRAQ 120 AHQQRQQSHL QMHEPGDSSL GCQMVNTDPL NSYNSNYYYV EEPHEQQFSV NNNHHHLQEN 180 YGSWGIQEST TLDSLNVKQS FIRVCDNEAK PDLEXSCERH KVRFETEELV ERRFVPSTQL 240 VMSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-70	LBD family protein