PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294929.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20255.3 Da    PI: 10.2688
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.24e-221153345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    ++++s rqvtfskRr+g++KKA+EL +LC+a+va+++fs+ gk
  XP_021294929.1 11 VKDSSSRQVTFSKRRTGLFKKANELATLCGAQVAIVVFSPGGK 53
                    7899************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MGRRKIEMEM VKDSSSRQVT FSKRRTGLFK KANELATLCG AQVAIVVFSP GGKPFSFGHP  60
SVEAVTQRFL NQDEKPKVSI SGQVGSQQQA KVENLSQQLN DLLKQIQEEK KRGEMLDKAI  120
KASGKHKCQK PVNKLSLDEL LQMKQSMEEL REKLKGRVSE IEASSSLLLL SNNGVKEADP  180
DN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-46M-type_MADS family protein