PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294999.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19771 Da    PI: 4.4966
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.8e-232672248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    + e++s+rqvtfskRr+g++KKA E+S+LC+aeva++ +s++g++y+
  XP_021294999.1 26 KLEDESKRQVTFSKRRKGLFKKATEVSTLCGAEVAILALSKSGRVYT 72
                    6799*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MDSASNTTDA TTTKKSRGRQ RIEIKKLEDE SKRQVTFSKR RKGLFKKATE VSTLCGAEVA  60
ILALSKSGRV YTTDGVDAVL DRYLADSSDS NPLPKQKEVE EDNAGFWWDQ PIENLTLVEL  120
VEYTMALNDL RETAAARLEE LNIQNSTYLW PFVADEDVNE ADIVHQFMVE RNYD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.14e-31M-type_MADS family protein