PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295183.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 897aa    MW: 99039.5 Da    PI: 6.4036
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24130231199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_021295183.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 220
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_021295183.1 221 KNQLLLGIRRA 231
                     9999****997 PP
2Auxin_resp119.62.4e-39256339183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  XP_021295183.1 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 339
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    
MRLASAGFNP QTQEDFAGEK RVLNSELWHA CAGPLVSLPP VGSRVVYFPQ GHSEQVAAST  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSLQEQ KEAYLPAELG  120
TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYIKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPARW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTSFPMYPS PFPLRLKRPW PPGLPSFHGI KDDDLGMNSP LMWLRGDADR GMQSLNLQGI  420
GVTPWMQPRL DASMVGLPAD MYQAMAAAAL QDLRVVDPSK PATASLLQFQ QTQNLPRRPA  480
ALMQPQMLQQ SQPQAFLQGV EDNQHQSQSQ AQTPPHLLQQ QLQHQNSFNS QQQPQHPLSQ  540
QHQQLVDHQQ IHCAVSAMSQ YASASQSQSS SLQAMPSLCQ QQSFSDSNGN TVTSPIVSPL  600
HSLLGSFPQD ESSNLLNLPR SNPVITSAAW PSKRAAVEVL SSGSPQCVLP QVEQLGQTQT  660
NMPQNSISLP PFPGRECSID QEGGTDPQSH LLFGVNIEPS SLLIQNGMSS LRGVGSDSDS  720
TTIPFSSNYM SAAGTDFSVN PAMTPSSCID ESGFLQSPEN VGQGNPQTRT FVKVYKSGSF  780
GRSLDISKFS SYNELRSELA QMFGLEGQLE DPLRSGWQLV FVDRENDVLL LGDDPWPVWC  840
IKILSPQEVQ QMGKRGLELL NSVPVQRLSN GSCDDYVSRQ DSRNLSSGIA SVGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein