PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295500.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YB
Protein Properties Length: 195aa    MW: 21023.5 Da    PI: 5.05
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1841.2e-5746142197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplkvyl +yreleg
  XP_021295500.1  46 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLGRYRELEG 140
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_021295500.1 141 DT 142
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MYGWMCAFGD LGFFGDMADG MQAGPTSPAG GSHESGGEQS SPHSNVREQD RYLPIANISR  60
IMKKALPANG KIAKDAKDTV QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLWAMATLG  120
FEDYIEPLKV YLGRYRELEG DTKGSARGGD GSLKRDAAGA LAAQNAQFAI QGSLNYITSQ  180
AQGQHMIVPS MQGNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.12e-73NF-YB family protein