PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295546.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 258aa MW: 29311.7 Da PI: 9.6154

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.8e-09	24	69	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE + + a + +G + +W ++a++++ g+t +++ ++ XP_021295546.1 24 SWTKEENKMFESALAIYGEDvpdRWLKVAEMIP-GKTVSDVIKQYRE 69 7******************************.*****999986 PP
2	Myb_DNA-binding	41	4.3e-13	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky XP_021295546.1 99 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 143 8***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
METLFATSFM SNSDWFDQES NSTSWTKEEN KMFESALAIY GEDVPDRWLK VAEMIPGKTV 60 SDVIKQYREL EEDVFKIEAG RFPIPGARGP DHERKKGVPW TEEEHRRFLM GLLKYGKGDW 120 RNISRNFVVS KTPTQVASHA QKYYQRQLSG GKDKRRPSIH DITTVNLTNT TFSDNHKPPS 180 VNHSNVLALQ QKLASMPKVG NNWNHPNDGS AMAFNSTHGN WFTSSQYQTA SNGLRLQGQN 240 LYGSAYHGAH IKPQSSVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.1	2e-88	MYB family protein