PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295689.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARR-B
Protein Properties Length: 557aa    MW: 61633.4 Da    PI: 6.7005
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.92.9e-25318372256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                      +++Wt+eLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQ kYR++
  XP_021295689.1 318 LKVDWTHELHKKFVQAVDQL-GVDQAIPSRILELMKVEGLTRHNVASHLQqKYRMH 372
                     5899****************.****************************549**86 PP
2Myb_DNA-binding35.81.9e-11320367246
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 
                        WT e+++++v+av qlG +   +++I + m  +g+t+ ++ s++q+
   XP_021295689.1 320 VDWTHELHKKFVQAVDQLGVDqaIPSRILELMKvEGLTRHNVASHLQQ 367
                      57********************************************96 PP
3Response_reg25.18.7e-10201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++ + +  +++ le  +y +v ++ +  eal  +  +   +++ ++ ++ ++ +G+  +k +++++ +lp ++ +     +++ +++ +G
  XP_021295689.1  20 VLLLDEDSNSAAEIKSKLEAMDY-IVYTFCNQNEALSAVSSRPesFHVAIVEVSTSNNNGS--FKFLETAK-DLPTVMTSNIHCISTMMKCIALG 110
                     7899999999999**********.***************666666*************996..67777766.899999998888*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++++l++
  XP_021295689.1 111 AVEFLRKPLSEDKLRN 126
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MVCTANDISA WKDFPKGLRV LLLDEDSNSA AEIKSKLEAM DYIVYTFCNQ NEALSAVSSR  60
PESFHVAIVE VSTSNNNGSF KFLETAKDLP TVMTSNIHCI STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAAG KDLSESLKPG KESVFSMLHL QMENGIPMNE DSDKTEDASV  180
VHEIDREPSP GSDKYPAPST PQLKQGERLL DDGDCQEHTN CSTEKESGEQ DGESKSVETT  240
SGNAIAEVTA PIGQPQGSRV SDVKGVADLV DGNKGESTVH SHPQNRVNRK DSQASAEKPS  300
TVSGLHSSCL NKANRKKLKV DWTHELHKKF VQAVDQLGVD QAIPSRILEL MKVEGLTRHN  360
VASHLQQKYR MHRRHILPKE DDPRWPQRDQ TQRSCYPHKP IMAFPPYHSN HVVPVGPLYP  420
MWGAPPHPAN IQMWGSPGYP PWQPTESWHW KPYPGFQADA WGCPVMHPPP GYCSAFTQNA  480
SGFHCSSTMD NRSGMPHNSV EHQPAEEVID KVVKEAINKP WLPLPLGLKP PSTEGVLAEL  540
SRQGISAVPP HINGSNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-151ARR-B family protein