PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295736.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26254.9 Da    PI: 4.9272
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-181151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i ++s r+ tf  R++g+lKKA+ELS+LC++e++vii+s+ 
  XP_021295736.1 11 IVDDSARKATFRIRKKGLLKKASELSTLCGIEACVIIYSPY 51
                    778999*********************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MTPRKEKFSY IVDDSARKAT FRIRKKGLLK KASELSTLCG IEACVIIYSP YDTQPVVWPS  60
PEGAQSVLSD FKKVPTMDQS KKMMNQESFL RQRIEIANQQ LQRQSKDNRE KEITQVMFQC  120
LAGQGLESLN MKDLNDLGRL LEQNLEDIDK RIDTLTKASH SQGSVAAASA TMATPEVMLK  180
SGEKVQAERP EREASTETED WEQMIDELLH SPEDVGLGLV LPFGDNNPTV FFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-59M-type_MADS family protein