PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295846.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 161aa    MW: 18138.9 Da    PI: 6.7916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-11349555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     n +Er RR+++++ +++L +llP++      K+s ++ Le+A+ +Ik+Lq
  XP_021295846.1  3 RNLIERERRSNLKNLYSKLFSLLPPQ----PAKMSLVDNLELATVHIKQLQ 49
                    699**********************6....39******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MQRNLIERER RSNLKNLYSK LFSLLPPQPA KMSLVDNLEL ATVHIKQLQR QVEGLKQRKM  60
QLDDKEGEAW NRVKSEGITP VLNIIDSDSI MEVNLVTGSD MKFTLGEIVS IIEEEGAEVI  120
GATYSHAGKV NRNILSVHCE EIGYKSSKGL ERLKSLIGDC M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.14e-09bHLH family protein