PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295934.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 220aa    MW: 23901.2 Da    PI: 6.7197
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.25.1e-42671661100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q++ l+a+la
  XP_021295934.1  67 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSDLQAQLA 161
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_021295934.1 162 KTQAE 166
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MENNDKAAIS PISVSTPFSY SPSSSSSPPT PHYSPGFPSP NSQSNSPKNS HLPPPPPASP  60
PPVVLSPCAA CKILRRRCVE KCVLAPYFPP TEPYKFTIAH RVFGASNIIK SLQELPESQR  120
ADAVSSMVYE ASARIRDPVY GCAGAICQLQ KQVSDLQAQL AKTQAELVTM QCQQANLLAL  180
ICMEMTQSKE PTSQQQPYSI DTSCFLDDSN LASAWEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-67LBD family protein