PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295950.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ERF
Protein Properties Length: 248aa    MW: 27236.4 Da    PI: 4.5797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295950.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1971122156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     + y+GVr++  +g+WvAeIr p   + r kr +lg+f ta+eAa a+++a++ ++ge
  XP_021295950.1  71 CNYRGVRQRT-WGKWVAEIRAP---N-RgKRLWLGTFPTAYEAALAYDEAARMMYGE 122
                     56*****999.**********8...3.35***********************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MVFVGDQNPK VGPTLSMDSS RKRKRRNGLS VADILKLWSQ NDEAKQQRKA PAKGSKKGCM  60
RGKGGPQNQG CNYRGVRQRT WGKWVAEIRA PNRGKRLWLG TFPTAYEAAL AYDEAARMMY  120
GENAILNMPY VSDSDSVATT SIAFSEADTM TVSPKSEICG YHADGEGETM NVEAPVDSEA  180
PSTSGVINTT DEIQPAKPEE ECMKETDYSW LNGLDFSEDI PIIGGPGVWD VGSYFSEDEV  240
FNIDEILG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126RKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-37ERF family protein