PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296004.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARF

Protein Properties

Length: 686aa MW: 75553.1 Da PI: 6.9161

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.5	6.1e-24	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF +++ XP_021296004.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RTE 211 89**************************985444444..8999*****************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_021296004.1 212 NGDLCVGIRRA 222 8999**997 PP
2	Auxin_resp	117.4	1.2e-38	282	365	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+++++FevvY+Prast+eF+vk++++++a+++++ +GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_021296004.1 282 AATRAANGQPFEVVYYPRASTPEFCVKASSIRAAMQIQWYPGMRFKMAFETEDSSRISWfMGTISSVQVVDPIRWPNSPWRLLQ 365 78999*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MITVMDSRKE LLKNSEKCLD PQLWHACAGG MVQMPSVNTK VFYFPQGHAE HANGSVDFGS 60 LLIPSLVLCR IAAVKYMADP ETDEVYSKIM LVPSRENDFG YEDDGFDGNI GMENPEKPAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT 180 PRRHLLTTGW SNFVNQKKLV AGDSIVFLRT ENGDLCVGIR RAKRGIGSGH EYPCGWNSGG 240 GSSGSQFGGY SPFLREDESK SMRKDSNGDM RGKVRVESVI EAATRAANGQ PFEVVYYPRA 300 STPEFCVKAS SIRAAMQIQW YPGMRFKMAF ETEDSSRISW FMGTISSVQV VDPIRWPNSP 360 WRLLQVAWDE PDLLHNVKRV SPWLVELVSN IPAIHLNPFS PPRKKMRLPQ HPDFSLLSQI 420 PMPSFSGNSL RSSSPVCCIT DNIPGGIQGA RHAPFGLSSS DLHSNKLQSG LFPLGLQQLD 480 HTAPPTRISS ENFSSDNVNK KNISCMLSTG NPTQSLKEIN EVKTPHILLF GQLIFSEQQA 540 SQSCSGDTAG NSSSDGNTEK TAISSDGSGS ALHQTARENS SSEGSPWCKE HKKSDLGLET 600 GHCKVFMESE NVGRTLDLSV LRSYEELHGK LANMFGIESS EMLSSVLYRD AAGSVKHTGD 660 EPFSEFLKTA RRLTILMDSG SDNLGR

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MITVMDSRKE LLKNSEKCLD PQLWHACAGG MVQMPSVNTK VFYFPQGHAE HANGSVDFGS  60
LLIPSLVLCR IAAVKYMADP ETDEVYSKIM LVPSRENDFG YEDDGFDGNI GMENPEKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW SNFVNQKKLV AGDSIVFLRT ENGDLCVGIR RAKRGIGSGH EYPCGWNSGG  240
GSSGSQFGGY SPFLREDESK SMRKDSNGDM RGKVRVESVI EAATRAANGQ PFEVVYYPRA  300
STPEFCVKAS SIRAAMQIQW YPGMRFKMAF ETEDSSRISW FMGTISSVQV VDPIRWPNSP  360
WRLLQVAWDE PDLLHNVKRV SPWLVELVSN IPAIHLNPFS PPRKKMRLPQ HPDFSLLSQI  420
PMPSFSGNSL RSSSPVCCIT DNIPGGIQGA RHAPFGLSSS DLHSNKLQSG LFPLGLQQLD  480
HTAPPTRISS ENFSSDNVNK KNISCMLSTG NPTQSLKEIN EVKTPHILLF GQLIFSEQQA  540
SQSCSGDTAG NSSSDGNTEK TAISSDGSGS ALHQTARENS SSEGSPWCKE HKKSDLGLET  600
GHCKVFMESE NVGRTLDLSV LRSYEELHGK LANMFGIESS EMLSSVLYRD AAGSVKHTGD  660
EPFSEFLKTA RRLTILMDSG SDNLGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein