PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296007.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 226aa    MW: 24927 Da    PI: 4.4399
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.89.9e-4071071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e+
  XP_021296007.1   7 SCGACKFLRRKCTSECVFAPYFCYDEaASHFAAVHKVFGASNVSKLLLHLPMHNRSDAAVTISYEALARMRDPIYGCVAHIFALQQQVANLQEEI 101
                     6***********************9868******************************************************************9 PP

          DUF260  95 allkee 100
                     + l ++
  XP_021296007.1 102 EILINQ 107
                     987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DEAASHFAAV HKVFGASNVS KLLLHLPMHN  60
RSDAAVTISY EALARMRDPI YGCVAHIFAL QQQVANLQEE IEILINQIAN HAADQVPSCG  120
NTQAATYPDG KIQFASLHET MSTVYYQDEQ AALPDHPGLL TGNQILDAQL CEPLPPSYEW  180
EDQNFPCNFY QNPPEINLEG VESGILIDYP CMGSSVTTTN WEGPSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-52LBD family protein