PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296036.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family Trihelix
Protein Properties Length: 240aa    MW: 27576.2 Da    PI: 10.5209
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix301.4e-0928105786
        trihelix   7 vlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     + +Liea  +   rl+rg l++++W+ev   +  r+ g   +++ +qCk++++ l+k+yk +++          s++p+f++++
  XP_021296036.1  28 TGTLIEAWGDXYLRLNRGDLRQKDWQEVLXPVnsRQNGAkqRKTDVQCKNRIDTLKKKYKLERTKXPP------SKWPFFKRID 105
                     778***************************99885555532569*****************9998886......58*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MNLRGPLTSP TPPAARGGRE DCXRRGATGT LIEAWGDXYL RLNRGDLRQK DWQEVLXPVN  60
SRQNGAKQRK TDVQCKNRID TLKKKYKLER TKXPPSKWPF FKRIDSLIGA NASVNKRHPA  120
VTFTIKTKAT SFLKGPRSTE SSFGDEDGDE DEVRKEHRVE DVGLSDGAAC RELARAILKF  180
GEIYERIESS KQQQIXGLEK QRMEFTKDLE FQRMNMLVDA QLEMEKSKRQ KHLTRPGKKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-64Trihelix family protein