PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296254.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 172aa    MW: 19136.9 Da    PI: 8.1112
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.5e-40111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+re++++sl+yeAear+rdPvyG++g i  lq+++ +l+++la
  XP_021296254.1  11 SCAACKLLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQHDLA 105
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     l++++
  XP_021296254.1 106 LARAR 110
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MRSQEPRSSA SCAACKLLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREETVNS LAYEAEARLR DPVYGCIGAI ALLQRKMIEL QHDLALARAR LARYAATTSS  120
AIISSDRVSM GPFGEFQVPA ASCGGFIDSF SLNSYEVNQD AHMYDFSQIP YV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.15e-62LBD family protein