PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296282.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28489.3 Da    PI: 9.7994
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.1e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_021296282.1 10 RIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSNKGKLFEYST 59
                    8***********************************************96 PP
2K-box94.71.5e-31831749100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + ++ + ++  e+ kL + ie Lqr++Rh+lGe+L++Lsl++Lq Leqq+++slk+iR++Kn+l++e+i+elqkke+ lq +n++L kkl+e
  XP_021296282.1  83 TGSESQGNWPLESPKLMSTIEALQRNLRHFLGEELDPLSLRDLQLLEQQIDTSLKRIRTRKNQLMHESISELQKKERTLQTQNNMLAKKLKE 174
                     56677899*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVQLRR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSN KGKLFEYSTD  60
SSMERILDRY EQQSHAERQL VPTGSESQGN WPLESPKLMS TIEALQRNLR HFLGEELDPL  120
SLRDLQLLEQ QIDTSLKRIR TRKNQLMHES ISELQKKERT LQTQNNMLAK KLKENEKTQT  180
EHAQCEQQNL SQNSSSFIQP PPATIEFPSL TIGGSFQAIE SANKEAETQA QPSTNTVIPP  240
WMLRHVNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-79MIKC_MADS family protein