PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296597.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25540.8 Da    PI: 6.807
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.3e-30958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl e+ 
  XP_021296597.1  9 ERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVALIIFSSRGKLSEFG 58
                    69**********************************************95 PP
2K-box584e-20821551184
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                     + ++++l+qe+ +Lk++ e+Lq +qR+llGe+Le+Ls+keL ++e+q++++l++ R+kK+  l ++ ++l+ + 
  XP_021296597.1  82 ADETQTLYQEVLRLKAKHESLQLSQRRLLGEELEELSMKELYNIEKQVDRALTQARQKKEVELEDENKQLKSQL 155
                     56799*************************************************************99999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRGKVVLER IENKINRQVT FSKRRNGMLK KAYELSVLCD AEVALIIFSS RGKLSEFGSS  60
TSVSQTLEKY WQHRYTSDVH FADETQTLYQ EVLRLKAKHE SLQLSQRRLL GEELEELSMK  120
ELYNIEKQVD RALTQARQKK EVELEDENKQ LKSQLELEQS FQAAQGLGDP NIEAGYEDNI  180
PPSQANHAHL PSLPQGYHQF IPQERASEAR LDKGANKPTA GWL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-43MIKC_MADS family protein