PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296813.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARR-B

Protein Properties

Length: 433aa MW: 48184.4 Da PI: 6.2949

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	67.7	2e-21	197	251	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++WtpeL ++Fv+av+ L Pk+ile+mk +gLt+++v+SHLQkYR+ XP_021296813.1 197 KKRMVWTPELDAKFVRAVQTLSKGSMVHPKRILEIMKEPGLTRAKVASHLQKYRM 251 78*****************9889999************************8 PP
2	Myb_DNA-binding	37.6	5e-12	199	250	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+e+d ++v+av+ l +g ++k+I + m g+t+ + s++qky+ XP_021296813.1 199 RMVWTPELDAKFVRAVQTLSKGsmvHPKRILEIMKePGLTRAKVASHLQKYR 250 789************************************************7 PP
3	Response_reg	59.7	1.6e-20	29	138	2	111
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l vd + + ++ l ++l k +y +v++++++ eale+l +++ +D++l+D++ +++G++ll+ i e +p+i+vt+ g+ e +++ l++Ga XP_021296813.1 29 LAVDAQIFSLQYLSVVLHKCNY-KVKATTSAAEALEILGANKneFDVVLVDVDSANIKGFKLLEIIGLEM-YIPVIMVTGDGSLENIIKGLNYGA 121 567778888999********.***********666667******************5544.7******************* PP SEEEESS--HHHHHHHH CS Response_reg 95 kdflsKpfdpeelvkav 111 d++ Kp+ +e+ +a+ XP_021296813.1 122 VDYIIKPVGVQEIKDAI 138 ***********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MEENFLNKRP ENSAVEIDDD AAVHKLRLLA VDAQIFSLQY LSVVLHKCNY KVKATTSAAE 60 ALEILGANKN EFDVVLVDVD SANIKGFKLL EIIGLEMYIP VIMVTGDGSL ENIIKGLNYG 120 AVDYIIKPVG VQEIKDAIWH CVAPNNTDWG SQQSTDTHES SDHQNVKPSE HSDASFTVED 180 DKHNTPLDDA SSSCQRKKRM VWTPELDAKF VRAVQTLSKG SMVHPKRILE IMKEPGLTRA 240 KVASHLQKYR MSLKKQQSFD IESVTRFSST KRTNRRYGKA GDVNADPVAV PSFNPFNSLE 300 DIMLVDPEKP YQSVPYSCLD DLNFQTPDFK SFNYYNYCLG MNIQPHNLGS EPLPGITSRP 360 PYFHDVGSEA SSPSSAPFYP SSNAFLAPET DVPFQSSFAV ASVPNRFPVK RSWTTGQSTN 420 LGNLLLSAAR RLL

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MEENFLNKRP ENSAVEIDDD AAVHKLRLLA VDAQIFSLQY LSVVLHKCNY KVKATTSAAE  60
ALEILGANKN EFDVVLVDVD SANIKGFKLL EIIGLEMYIP VIMVTGDGSL ENIIKGLNYG  120
AVDYIIKPVG VQEIKDAIWH CVAPNNTDWG SQQSTDTHES SDHQNVKPSE HSDASFTVED  180
DKHNTPLDDA SSSCQRKKRM VWTPELDAKF VRAVQTLSKG SMVHPKRILE IMKEPGLTRA  240
KVASHLQKYR MSLKKQQSFD IESVTRFSST KRTNRRYGKA GDVNADPVAV PSFNPFNSLE  300
DIMLVDPEKP YQSVPYSCLD DLNFQTPDFK SFNYYNYCLG MNIQPHNLGS EPLPGITSRP  360
PYFHDVGSEA SSPSSAPFYP SSNAFLAPET DVPFQSSFAV ASVPNRFPVK RSWTTGQSTN  420
LGNLLLSAAR RLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	2e-46	ARR-B family protein