PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297096.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 219aa    MW: 23842.2 Da    PI: 8.3693
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.91.5e-42431421100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+
  XP_021297096.1  43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAVNSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELN 137
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_021297096.1 138 AVRAE 142
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSRERERFDE VGKKITREVD VSSHHMGRRH MLGPLGTLNT ITPCAACKLL RRRCAQECPF  60
SPYFSPHEPQ KFASVHKVFG ASNVSKMLME VPESQRADAV NSLVYEANVR LRDPVYGCMG  120
AISALQQQVQ SLQAELNAVR AEILKYKCGE ANLIPSSHVT LLSSGAVSVA TLPSAPTQPP  180
PPPPPPPLLP TSSSSSMYNQ PTSAADYSTI SNENVSYFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-84LBD family protein