PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297666.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 522aa    MW: 58546.8 Da    PI: 5.4983
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.2e-24125226199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt  d++ +g +++p +fa+++     ++ ++ s++l+ +d+ g++W++++iyr++++r++lt+GWk+Fv++++L +gD +vF   + +++
  XP_021297666.1 125 FCKTLTALDTSLHGGFSVPMRFADQClpqldMSRQPPSQDLIARDLLGNQWRFTHIYRGQPRRHLLTSGWKDFVSSKRLGAGDAFVFL--RGENG 217
                     99****************************9444556679************************************************..44999 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+v+v+r+
  XP_021297666.1 218 ELCVGVRRA 226
                     9*****996 PP
2Auxin_resp97.71.7e-32250330183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++a++ +++F++ Y+Pr+s++eF+++++++++++k+++++GmRf+m+++ e ++e++  Gt+vg++d+dp++Wp+SkWr+Lk
  XP_021297666.1 250 AWEALARRTMFTISYKPRTSPAEFIIPIDQYMNSVKNNYTIGMRFQMKINWEGCPEQS--GTIVGIEDADPIKWPGSKWRCLK 330
                     7999****************************************************99..*********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    
MESQNSHFTY LNAIRDSETA LYEALWHACS GPLVTVPRAG ERAFYFPQGH LEQVEAFTNQ  60
VIDLPRCDLP SKILCRVINV QLKADPETDE VLAQVTLLPE INQEENDAEM EPPLPPLPEF  120
LVHSFCKTLT ALDTSLHGGF SVPMRFADQC LPQLDMSRQP PSQDLIARDL LGNQWRFTHI  180
YRGQPRRHLL TSGWKDFVSS KRLGAGDAFV FLRGENGELC VGVRRAMKPR SNVSASISIP  240
DMYLAVLATA WEALARRTMF TISYKPRTSP AEFIIPIDQY MNSVKNNYTI GMRFQMKINW  300
EGCPEQSGTI VGIEDADPIK WPGSKWRCLK VRWDGTCSTT PPERVSPWKI ELALTYPILS  360
PLPMPWPESN MVPLSPDSSV LTQEGSLRVT IQPPQGSGFS RVSQCHKIST FGDNFAKMNE  420
PTTAEDSVMQ PLFVHEKKFD MVSASMSNEP TNTEYLLNSG SSNSDSWCCC PLFVDETLAT  480
ANSTRKQLLD QEEKHSLLVS PRSLMPPALP AQLADTFGRI FI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein