PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298308.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YA
Protein Properties Length: 203aa    MW: 22352.6 Da    PI: 8.7126
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.8e-33108164158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e+e+k+  ksrkpylheSRh hAlrR+RgsgGrF
  XP_021298308.1 108 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGSGGRF 164
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MTSSVHDLSD NNEVNEQQKE SESQDQSSSP PTGLSHSAMT TPNVPYTTPQ HAVAPAAYPY  60
PDPYYRSIFA PYDAQPYPPQ PYGGQPMVHL QLMGIQQAGV PLPSDAVEEP VFVNAKQYHG  120
ILRRRQSRAK AESENKVLKS RKPYLHESRH LHALRRARGS GGRFLNAKKN GNKQNDAASG  180
DKSQSDINLN SDKNEVNSAE GTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-54NF-YA family protein