PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298473.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 201aa    MW: 22626.1 Da    PI: 8.198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-0880123755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ r+RR++i ++++eL +l+P         K+  ae+L+ A +Y++ Lq
  XP_021298473.1  80 IAARQRRRKITNKIQELGKLIPGgH------KMRTAEMLQAAYKYVNFLQ 123
                     667*******************945......****************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
CQQDPKRQKN VSNYYCSNFG ANFLAGCVPN SAPSPAATDL FLPKIPVPLP EFEPEMPTFS  60
CENENAKKTS PVSVSNLQSI AARQRRRKIT NKIQELGKLI PGGHKMRTAE MLQAAYKYVN  120
FLQAQVGVLE AMWSFHQGKE EALMHSQELP NLLISQAIQE KLYSEEKCLI PKDFVQTLAS  180
DYQIQSKPLI IEEINRILLT S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.13e-30bHLH family protein