PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298647.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 200aa MW: 22357.7 Da PI: 8.6735

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298647.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	87	109	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr f + C+yGdrC+F H+ XP_021298647.1 87 KLCRMFCTGRNCSYGDRCRFLHV 109 6899999999************6 PP
2	zf-CCCH	41	3.3e-13	160	186	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+++ tG C+yG C+FaHg+ XP_021298647.1 160 WKTKLCNNWKMTGGCPYGKACCFAHGE 186 8************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MLSNYSMNIS RDANKPMLQW QPQHPIQGKD HETSSLIEYP SFKKRRICEN FVPNPSIPVA 60 MKEVASGCFK ARQCGPKWKE FADDSKKLCR MFCTGRNCSY GDRCRFLHVI PDEFRDISMI 120 NIVPGAAPVY QNRGSGELDC KGSVGSLNVG NEVVPKPTSW KTKLCNNWKM TGGCPYGKAC 180 CFAHGEAELQ KLGGHFALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-19	C3H family protein