PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298847.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 314aa    MW: 35757 Da    PI: 6.1707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++++G g+W+  a++ g++Rt+k+c++rw++yl
   XP_021298847.1 24 RGPWTLEEDTLLTHYIARHGEGRWNMLAKCAGLRRTGKSCRLRWLNYL 71
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_021298847.1  77 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MRSAMPPVTK GMCPPSEDDS ELRRGPWTLE EDTLLTHYIA RHGEGRWNML AKCAGLRRTG  60
KSCRLRWLNY LKPDIKRGNL TPQEQLLILE LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKQARQLN IESNSKKFLE AVRCFWMPTL LQKVEQTSSS SSLKEMSSQN SAPSDQLLDC  180
AIPSLSTFSP LPNKITDRSN HSFENSSSVT SQSLYPTDFI NTSEQTEIPE HLTSPNVYGH  240
ATVYNNNQIV NASYNIDSSG YDMEGFSLAS MSAVGSYEGS PSECQMGEGN WICNEMTDTL  300
WNMDDIWQFR ELGE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-94MYB family protein