PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299059.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 172aa MW: 18836.1 Da PI: 7.3357

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.3	1.8e-45	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ el+ XP_021299059.1 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQRELD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_021299059.1 105 ATNA 108 9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MASSSYSNAP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVPP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVMRLQ RELDATNADL IRYACNEMPP 120 ASISQYGRRT GHHGGAAGAA SFNQNSGYYY PSQWNSDDPC GDNERSSGGG SM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-71	LBD family protein