PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299144.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 390aa MW: 44385.2 Da PI: 9.3271

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+t+++ g+ R++k+c++rw +yl XP_021299144.1 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	57.4	3.3e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E++++++++++lG++ W++Ia++++ gRt++++k++w++ XP_021299144.1 67 RGAFTESEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGAF TESEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG 120 LDPVTHKPIE KAEKTDGKNT MTSNSNSSNK QEASFESKSE DDHAITVSTS RDETGEESQV 180 IFDETNDLLN NYQMLCGSFD LESWLNQDTN TSSSYTSSFS VEESNNPSMA WPRSKDSSSC 240 TRKCEHFEEN SVSLAQAMQR AIPRIHTIVA TPRLKCFSLN APRIVEVEYA NGSKFCLSAE 300 FLRVYSPAAD GKIRSIGGEK VISGRRHVGI MSAEPVGNYG VRIVFDDLHK TGIYSWDYFY 360 NLGTNKFTLI RNYIKTLKKH GLSRDPPKRK

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TESEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPVTHKPIE KAEKTDGKNT MTSNSNSSNK QEASFESKSE DDHAITVSTS RDETGEESQV  180
IFDETNDLLN NYQMLCGSFD LESWLNQDTN TSSSYTSSFS VEESNNPSMA WPRSKDSSSC  240
TRKCEHFEEN SVSLAQAMQR AIPRIHTIVA TPRLKCFSLN APRIVEVEYA NGSKFCLSAE  300
FLRVYSPAAD GKIRSIGGEK VISGRRHVGI MSAEPVGNYG VRIVFDDLHK TGIYSWDYFY  360
NLGTNKFTLI RNYIKTLKKH GLSRDPPKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	6e-85	MYB family protein