PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021299160.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 255aa    MW: 28995.8 Da    PI: 9.0443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021299160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003495117223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  H +  H
  XP_021299160.1  95 SCSVCSRVYPTSRLLSIHVSEvH 117
                     6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MAMVVDCQHD LSFPYWTSTL RRFDPDSPFF SSGNIERELL AKQVALDLTE DERNQLEKMV  60
DKDARGVFCP IVGCGARLIS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHVSEVHDSF  120
FQAKVARGYA MYECLVEGCG LKFKSYKGRQ QHLVDKHKFP TSFEFFKKAH PSKKQRQKNH  180
RKQAMHKKDE EASSKMEVEN ETMDGLVSAV SKLSTSDSSP STVSFGRRHT RGLPFVPRSV  240
QHEKRADSTP AGAKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179KKQRQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-117C2H2 family protein