PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299244.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 211aa MW: 24057.2 Da PI: 8.4397

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.8e-18	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l d+vk G+g+W++Ia++ g++R++k+c++rw +yl XP_021299244.1 12 KGLWTVEEDKILMDYVKVNGKGQWNKIAKKTGLNRCGKSCRLRWINYL 59 678*******************************************97 PP
2	Myb_DNA-binding	57.9	2.4e-18	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g +++eE++l+++++k+lG++ W++Ia++++ gRt++q+k++w+ + XP_021299244.1 65 KGDFSEEEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNGH 109 689*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTMKKGESPY RKGLWTVEED KILMDYVKVN GKGQWNKIAK KTGLNRCGKS CRLRWINYLN 60 PDVKKGDFSE EEEDLIIRLH KLLGNRWSLI AKRVPGRTDN QVKNYWNGHL SKKMGIKEQN 120 RKRVHSRQSS KQVNEPDHAA IDPSPGDATS GTMEAAVDQS CQKATEVLNA TQESGISESY 180 VNPFWIPGDD LELSSLTMME YLDEYSSFDL A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	9e-78	MYB family protein