PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299249.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 446aa MW: 48930.6 Da PI: 8.396

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299249.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	269	322	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_021299249.1 269 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 322 9****************************************************7 PP
2	Myb_DNA-binding	46.5	8.6e-15	270	321	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_021299249.1 270 RMRWTSTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 321 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MPLEGVFVEP SSNPIPDLSL HISPPKASTS LICSKSSEVI DTSFNLLSRH EVSKSNSGTS 60 MISASQAYTE LSLARPHPAN VMEQERQCRR KSAGGAEQPS HTPLHRTHRH LHPANTHLNH 120 INHGVSLLDV SDGARPIKGI PVYQNRSFPF PTLENLSRER DPKVCFYQIP YPSSSLYSSS 180 PSLSASPYFG GGLDPISILS SGSTQGSPAY RSPATIRFNG ISMDAFKSHQ LHQQPQHNHY 240 GIGSSDASNG LIRSRFLPKL PTKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL 300 ELMDVKDLTL AHVKSHLQMY RTVKTTDKPA ASSDGSGEED ISTVVSGSER GLRGLTDQIG 360 TSDGSLQQEL DYPCNPSTTT STLWSNSSRE AWLHSNSNDI DGVRGPLSFQ FNKTEESCDS 420 TPLLNCKNPS LEFTLGRPDW HGTQHK

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MPLEGVFVEP SSNPIPDLSL HISPPKASTS LICSKSSEVI DTSFNLLSRH EVSKSNSGTS  60
MISASQAYTE LSLARPHPAN VMEQERQCRR KSAGGAEQPS HTPLHRTHRH LHPANTHLNH  120
INHGVSLLDV SDGARPIKGI PVYQNRSFPF PTLENLSRER DPKVCFYQIP YPSSSLYSSS  180
PSLSASPYFG GGLDPISILS SGSTQGSPAY RSPATIRFNG ISMDAFKSHQ LHQQPQHNHY  240
GIGSSDASNG LIRSRFLPKL PTKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL  300
ELMDVKDLTL AHVKSHLQMY RTVKTTDKPA ASSDGSGEED ISTVVSGSER GLRGLTDQIG  360
TSDGSLQQEL DYPCNPSTTT STLWSNSSRE AWLHSNSNDI DGVRGPLSFQ FNKTEESCDS  420
TPLLNCKNPS LEFTLGRPDW HGTQHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	6e-80	G2-like family protein