PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299322.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 458aa MW: 51837.9 Da PI: 6.794

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.4e-19	211	257	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v+++G++ W++Ia++++ gR +kqc++rw+++l XP_021299322.1 211 KGQWTPQEDRLLVQLVTRHGTKKWSLIAKMLN-GRVGKQCRERWHNHL 257 799***************************.***********97 PP
2	Myb_DNA-binding	55.7	1.1e-17	263	305	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEd +l++a+k+ G++ W+ Iar+++ gRt++ +k++w+ XP_021299322.1 263 KDSWSEEEDRILIEAHKEIGNK-WAEIARRLP-GRTENTIKNHWN 305 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MEFETSLRED FPFLSNLFSD NSPLKPDFGN GFPLDGSSSS KGLLHNFILP DHSHYSPSVN 60 NGPLLNPHHF HQFPAEGSSR NPFFGVSLTC TDAFEPYVNG FPNDLNAYIP SLAFAPDGVN 120 NNVFLQGFQS EGCWDFSQKV PPQPLQPETQ TTYQPLIFQD QEGPVAAKVA DEVSCVTGDQ 180 NGYQDKVDQK RDKRFQTRRC YKAPKKSNII KGQWTPQEDR LLVQLVTRHG TKKWSLIAKM 240 LNGRVGKQCR ERWHNHLRPD IRKDSWSEEE DRILIEAHKE IGNKWAEIAR RLPGRTENTI 300 KNHWNATKRR QYSRRKGKDS NPKGSLLQSY IKSVSSTSTR KDKGKRVMEA NAQMLINNNP 360 AATNPQAVQV QSSDINPKDW PVAVYNAQAD HDQPMNFSFD TSVFGESCTA SFESMLEEVP 420 SGSVVEESNA VMDFELPLEM DSKKKELDLL EMISQGNL

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MEFETSLRED FPFLSNLFSD NSPLKPDFGN GFPLDGSSSS KGLLHNFILP DHSHYSPSVN  60
NGPLLNPHHF HQFPAEGSSR NPFFGVSLTC TDAFEPYVNG FPNDLNAYIP SLAFAPDGVN  120
NNVFLQGFQS EGCWDFSQKV PPQPLQPETQ TTYQPLIFQD QEGPVAAKVA DEVSCVTGDQ  180
NGYQDKVDQK RDKRFQTRRC YKAPKKSNII KGQWTPQEDR LLVQLVTRHG TKKWSLIAKM  240
LNGRVGKQCR ERWHNHLRPD IRKDSWSEEE DRILIEAHKE IGNKWAEIAR RLPGRTENTI  300
KNHWNATKRR QYSRRKGKDS NPKGSLLQSY IKSVSSTSTR KDKGKRVMEA NAQMLINNNP  360
AATNPQAVQV QSSDINPKDW PVAVYNAQAD HDQPMNFSFD TSVFGESCTA SFESMLEEVP  420
SGSVVEESNA VMDFELPLEM DSKKKELDLL EMISQGNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	206	QKRDKRFQTRRCYKAPKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	1e-79	MYB family protein