PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021299323.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 145aa    MW: 16546.4 Da    PI: 10.5812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021299323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.8e-1531119896
                     -HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   8 sdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     s + +++rl +p k+++ +    gg      +l ++desg  W++ +++rk++     vl++GW+eFv a+ L +gD v+F+ ++++++   +k+
  XP_021299323.1  31 SRTDALKRLAIPTKCLAFFplfcGGH---ALELPVRDESGHCWTFVCSIRKTGAYqkPVLQQGWREFVLAKCLHVGDRVTFYEQESEDG---IKI 119
                     455566789*******8889998655...347***************9855554445*************************4333554...555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MASTGKKAFH ESKAKQKQAK KRRVLFSKRV SRTDALKRLA IPTKCLAFFP LFCGGHALEL  60
PVRDESGHCW TFVCSIRKTG AYQKPVLQQG WREFVLAKCL HVGDRVTFYE QESEDGIKIF  120
GSILPRSRYG IEIEKTMRPL TARPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-09B3 family protein