PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299423.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GeBP

Protein Properties

Length: 187aa MW: 21400.6 Da PI: 9.9551

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	101.5	7.3e-32	39	130	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqr+++e+De+++L +++++ k+g++ps+di++fy+fv ksi+++v+k ql +Ki+rLKkKf+k+ k + +f ++h qkif+ls+ iW XP_021299423.1 39 LFQRVFNEDDEVAVLEAILEYSIKKGTNPSADINGFYDFVMKSIHVDVTKAQLKDKIKRLKKKFRKNAKG-----NRTFLNSHAQKIFDLSNTIW 128 79**************************************************************9999.....789*************** PP DUF573 97 gs 98 g+ XP_021299423.1 129 GQ 130 96 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MATSTIHANC SSDSNQVKSP KRNASAAVET CGEDEKKPLF QRVFNEDDEV AVLEAILEYS 60 IKKGTNPSAD INGFYDFVMK SIHVDVTKAQ LKDKIKRLKK KFRKNAKGNR TFLNSHAQKI 120 FDLSNTIWGQ EVKGKEAMEV DMGESRATLE HKWRKLEIAE LEVFLQRKKL IVEQAKLMLE 180 RLKSEQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	104	KRLKKKFRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-15	GeBP family protein