PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299490.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 489aa MW: 53405.4 Da PI: 8.2337

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7e-11	110	134	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_021299490.1 110 GEKDCAHYMLTRTCKFGDSCKFDHP 134 7889********************8 PP
2	zf-CCCH	33.9	5.3e-11	163	187	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ XP_021299490.1 163 EPDCPYFLKTQRCKFGSKCKFNHPK 187 789********************96 PP
3	zf-CCCH	31.9	2.3e-10	210	234	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+ +tG Ck+G++CkF+H++ XP_021299490.1 210 EPSCAFYVKTGKCKFGATCKFHHPK 234 577********************96 PP
4	zf-CCCH	38.2	2.4e-12	281	304	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_021299490.1 281 EVDCPFYLKTGSCKYGSSCRYNHP 304 579********************9 PP
5	zf-CCCH	40.2	5.5e-13	372	396	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++tG C++GdrCkF+H+ XP_021299490.1 372 GQTECEYYMKTGDCRFGDRCKFHHP 396 6789********************8 PP
6	zf-CCCH	39.3	1e-12	428	449	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_021299490.1 428 CPYYMKTGTCKYGATCKFDHPP 449 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MANQLYGYTP RYSSPSPTAS LSSALQRYLD SETTAHSHLL HHLQPWPPGV DVPSSAAPIK 60 RPSEVLYHQN ILDAHNTIGQ TEAWYSTSSL VKRPRLESAS NLPIYPQRPG EKDCAHYMLT 120 RTCKFGDSCK FDHPIWVPEG GIPDWKEVPL ATTGESLPER AGEPDCPYFL KTQRCKFGSK 180 CKFNHPKDKL AISGAFENIQ VAVLPERPSE PSCAFYVKTG KCKFGATCKF HHPKDIQIAS 240 SGQDNARGEQ PEIVSKTGGA TADVKPALFH NSKGLPIRLD EVDCPFYLKT GSCKYGSSCR 300 YNHPDRNAFN PPAAVVGHSL VASASNLNIG VVTPAASIYQ TIDPRLGQST LLAQPTFPTL 360 GVAPTVYPQR PGQTECEYYM KTGDCRFGDR CKFHHPIDRS ASKTKQTSQQ AIKLTLAGLP 420 RREGNVHCPY YMKTGTCKYG ATCKFDHPPP GEVMAIAAAQ GPSTAVGGEE KGEMEEAETV 480 GTNIAMRSC

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MANQLYGYTP RYSSPSPTAS LSSALQRYLD SETTAHSHLL HHLQPWPPGV DVPSSAAPIK  60
RPSEVLYHQN ILDAHNTIGQ TEAWYSTSSL VKRPRLESAS NLPIYPQRPG EKDCAHYMLT  120
RTCKFGDSCK FDHPIWVPEG GIPDWKEVPL ATTGESLPER AGEPDCPYFL KTQRCKFGSK  180
CKFNHPKDKL AISGAFENIQ VAVLPERPSE PSCAFYVKTG KCKFGATCKF HHPKDIQIAS  240
SGQDNARGEQ PEIVSKTGGA TADVKPALFH NSKGLPIRLD EVDCPFYLKT GSCKYGSSCR  300
YNHPDRNAFN PPAAVVGHSL VASASNLNIG VVTPAASIYQ TIDPRLGQST LLAQPTFPTL  360
GVAPTVYPQR PGQTECEYYM KTGDCRFGDR CKFHHPIDRS ASKTKQTSQQ AIKLTLAGLP  420
RREGNVHCPY YMKTGTCKYG ATCKFDHPPP GEVMAIAAAQ GPSTAVGGEE KGEMEEAETV  480
GTNIAMRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein