PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299492.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 401aa MW: 43546.7 Da PI: 9.1072

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.2e-11	75	99	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ XP_021299492.1 75 EPDCPYFLKTQRCKFGSKCKFNHPK 99 789********************96 PP
2	zf-CCCH	32.2	1.8e-10	122	146	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+ +tG Ck+G++CkF+H++ XP_021299492.1 122 EPSCAFYVKTGKCKFGATCKFHHPK 146 577********************96 PP
3	zf-CCCH	38.5	1.9e-12	193	216	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_021299492.1 193 EVDCPFYLKTGSCKYGSSCRYNHP 216 579********************9 PP
4	zf-CCCH	40.6	4.3e-13	284	308	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++tG C++GdrCkF+H+ XP_021299492.1 284 GQTECEYYMKTGDCRFGDRCKFHHP 308 6789********************8 PP
5	zf-CCCH	39.7	8.3e-13	340	361	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_021299492.1 340 CPYYMKTGTCKYGATCKFDHPP 361 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MDTRLDTRAH HLRPLSPPRS SVIWTPRPRL IRICFTTSSP GLQVSTSLPP RRLSNAPPKV 60 PLATTGESLP ERAGEPDCPY FLKTQRCKFG SKCKFNHPKD KLAISGAFEN IQVAVLPERP 120 SEPSCAFYVK TGKCKFGATC KFHHPKDIQI ASSGQDNARG EQPEIVSKTG GATADVKPAL 180 FHNSKGLPIR LDEVDCPFYL KTGSCKYGSS CRYNHPDRNA FNPPAAVVGH SLVASASNLN 240 IGVVTPAASI YQTIDPRLGQ STLLAQPTFP TLGVAPTVYP QRPGQTECEY YMKTGDCRFG 300 DRCKFHHPID RSASKTKQTS QQAIKLTLAG LPRREGNVHC PYYMKTGTCK YGATCKFDHP 360 PPGEVMAIAA AQGPSTAVGG EEKGEMEEAE TVGTNIAMRS C

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MDTRLDTRAH HLRPLSPPRS SVIWTPRPRL IRICFTTSSP GLQVSTSLPP RRLSNAPPKV  60
PLATTGESLP ERAGEPDCPY FLKTQRCKFG SKCKFNHPKD KLAISGAFEN IQVAVLPERP  120
SEPSCAFYVK TGKCKFGATC KFHHPKDIQI ASSGQDNARG EQPEIVSKTG GATADVKPAL  180
FHNSKGLPIR LDEVDCPFYL KTGSCKYGSS CRYNHPDRNA FNPPAAVVGH SLVASASNLN  240
IGVVTPAASI YQTIDPRLGQ STLLAQPTFP TLGVAPTVYP QRPGQTECEY YMKTGDCRFG  300
DRCKFHHPID RSASKTKQTS QQAIKLTLAG LPRREGNVHC PYYMKTGTCK YGATCKFDHP  360
PPGEVMAIAA AQGPSTAVGG EEKGEMEEAE TVGTNIAMRS C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-138	C3H family protein