PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021299638.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 317aa    MW: 35613.9 Da    PI: 7.3274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021299638.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+ +++++G g+W+t +++ g+ R++k+c++rw +yl
   XP_021299638.1 14 KGPWTPDEDQKLLAYIEEHGFGNWRTLPEKAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.22.9e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E++ ++++++ lG++ W++Ia++++ +Rt++++k++w+++
   XP_021299638.1  67 RGKFSLQEEQTIIHLHAFLGNR-WSAIAAHLP-NRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MARSACCENM GLKKGPWTPD EDQKLLAYIE EHGFGNWRTL PEKAGLQRCG KSCRLRWINY  60
LRPDVKRGKF SLQEEQTIIH LHAFLGNRWS AIAAHLPNRT DNEIKNYWNT HIKKRFSKMG  120
IDPTTHKPIS NPPSSTSGGH SRNTGTLSHM AQWERARLEA EARLVRESKL VSKPSPNNKP  180
GFSARPRSTR TSSAPSTRSQ CLDVLKAWQS VVAGMFAITN NNLDPPPSTT FLDNSIPVST  240
TNELDLAAAG STCMEGIIAE DDQLMLDDRS NQVPELNEKF DTSMALHDST YHWTADSGNT  300
IEDFWDISVH DFGYPMD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.18e-87MYB family protein