PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300014.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Whirly

Protein Properties

Length: 236aa MW: 26142.9 Da PI: 10.2806

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	179.4	7.3e-56	61	196	2	137
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 vyk+kaa++v + +ptf+++dsgnlkl+r+G+++l++ +a++erkydWek+q+fals+tev++l+++++++ +effhdp++ +sn+G+v k l + XP_021300014.1 61 VYKGKAAFSVTPLLPTFSKIDSGNLKLDRRGAMMLTFWPAVGERKYDWEKRQRFALSPTEVGSLISMGAHDVSEFFHDPSMLSSNAGQVSKKLYI 155 9******************************************************************************************** PP Whirly 97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 + l G G++++l+v+n+l+k+ne+f vP++ aefavl+++ XP_021300014.1 156 KALDGGNGYMISLTVSNNLLKSNERFNVPITTAEFAVLKTA 196 9999*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MMKLWRSRNL SSQTLLSVKG GDVRDALWSH AFESRAAIST SIHDSAAKGN STARVIAPYT 60 VYKGKAAFSV TPLLPTFSKI DSGNLKLDRR GAMMLTFWPA VGERKYDWEK RQRFALSPTE 120 VGSLISMGAH DVSEFFHDPS MLSSNAGQVS KKLYIKALDG GNGYMISLTV SNNLLKSNER 180 FNVPITTAEF AVLKTACSFA LPHIIGWDWL TNRSHKGIEG SSSKVNPKLL DLEWDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	2e-84	Whirly family protein